Whole blood qPCR detection and quantitation of Streptococcus pneumoniae

18 July 2024

Challenging Clinicians and Medical Microbiologists to reconsider sepsis management

Lisa Simms [1], David Farlow [1][2], Matthew I. Hiskens [2] , Tesfaye S. Mengistu [2], Nicolas Sieben [2], Brian McPherrin [2], Janath De Silva [2], Ron Nightingale [2], Karen Smith [2], Corey Davies [1], Nadeesha Jayasundara [1], Sumeet Sandhu [1], Alex Pintara [1], Raffaella Giardino [1], Flavia Huygens [1]

Results

S. pneumoniae infection was detected in 19 patients using InfectID-BSI. Significantly, in each of these 19 patients, BC reported no growth. Nearly 50% of patients (9/19) with S. pneumoniae detections had clinical or radiological evidence of a pneumonic process or significant respiratory distress. Four of 19 (21.1%) patients had a diagnosis of urosepsis with Escherichia coli. Three of four patients had polymicrobial infection with low quantities of S. pneumoniae. Clinical concordance indicated that 80% of S. pneumoniae detections were likely the primary/secondary cause of sepsis. Rare clinical presentations (supported by the literature) included two patients with cellulitis, one with rhabdomyolysis, and one with appendicitis.

Table 1: An exemplar of polymicrobial infections with S. pneumoniae in four patients with a primary diagnosis of urosepsis, including Quantitation. S. pneumoniae infections were not detected by blood culture.

Patient IDBlood culture resultInfectID-BSI result
[Quant: # genome copies / 0.35 mL blood]
MB5E. coliE. coli [676*]
S. pneumoniae [201]
MB13**No growthE. coli [676*]
S. pneumoniae [201]
MB14No growthE. coli [869]
S. pneumoniae [95]
MB39**No growthE. coli [17,583*]
S. pneumoniae [7]

*Mean values from replicate samples; **These patients have evidence of prior antibiotic exposure

Reference
  1. Microbio Ltd., Brisbane, Australia[][][][][][][][]
  2. Mackay Hospital and Health Service, Mackay, Australia[][][][][][][][]